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    Home ยป Recipes ยป Cookie Recipes

    Chocolate Ganache Thumbprint Cookies

    Updated: Feb 17, 2025 by Megan Weimer ยท This post may contain affiliate links.

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    Jump to Recipe

    These chocolate ganache thumbprint cookies are rich, crisp chocolate shortbread cookies filled with shiny, decadent dark chocolate ganache! Perfect for the holidays or any cookie craving, these ganache cookies are sure to impress and are a chocolate lover's dream.

    A stack of chocolate ganache thumbprint cookies with a bite taken out of the top cookie.

    If you're a chocolate lover, these chocolate ganache thumbprint cookies will be your new favorite! Made with rich chocolate shortbread and filled with a dollop of smooth, dark chocolate ganache, they're the perfect holiday cookie to bake this time of year.

    With some red and green nonpareils or chopped candy canes on top, these make great Christmas cookies and look amazing in any holiday cookie box.

    For more chocolate cookie recipes, try these chocolate marble cookies, brownie crinkle cookies, snowstorm cookies, or chocolate chip sugar cookies.

    Jump to:
    • Why You'll Love This Recipe
    • Ingredient Notes
    • Substitutions and Variations
    • Step by Step Instructions
    • Expert Baking Tips
    • Storage and Freezing
    • Frequently Asked Questions
    • More Cookie Recipes to Try
    • ๐Ÿ“– Recipe
    • ๐Ÿ’ฌ Comments

    Why You'll Love This Recipe

    • Super chocolatey cookies- Chocolate lovers, these cookies are for you! The dough is made with Dutch-processed cocoa, and the ganache filling is thick and decadent.
    • Crisp shortbread texture- These are buttery cookies with a crisp texture that melts in your mouth. The dark chocolate ganache filling makes the centers chewy after they're chilled.
    • Easy to make- While you need a hand mixer or stand mixer (and a little patience since the dough needs to chill), chocolate ganache cookies are easy to make! They bake in 10 minutes, with ganache ready in 5 while they bake.

    Ingredient Notes

    Here are notes about some of the ingredients used. For quantities and full instructions, see the recipe card below.

    Ingredients to make chocolate ganache cookies on a wood surface.
    • All purpose flour- Makes up the structure of the cookies. I recommend weighing it in grams with a kitchen scale instead of using measuring cups for the best results.
    • Dutch-processed cocoa powder- This kind of cocoa powder is treated with an alkalizing agent, which makes the color and flavor deeper and extra chocolatey! You can use unsweetened natural cocoa powder if you can't find Dutch, but the flavor won't be as intense.
    • Salt- A pinch of sea salt or Kosher salt helps to counteract the sweetness and balance the flavor profile of the cookies.
    • Unsalted butter- You need room temperature butter for the cookie dough so it creams easily with the sugar. However, you need cold butter for the ganache so it's shiny. Unsalted butter helps control the amount of salt in the recipe.
    • Granulated sugar- Sweetens the cookies and also helps them get crisp edges.
    • Brown sugar- You can use light or dark brown sugar to give the cookies a little extra chew and subtle molasses flavor. Make sure the sugar is soft and fresh!
    • Egg yolks- I usually use an egg plus an egg yolk to make rich and chewy cookies, but this recipe has 2 egg yolks just because the egg white made them too moist. We're going for a shortbread texture here! Make sure they're room temperature so they mix into the dough easily.
    • Vanilla extract- I always recommend pure vanilla extract or an equal amount of vanilla bean paste for the best flavor.
    • Dark chocolate- For the ganache filling, use dark chocolate that's about 70% cacao. The ganache won't set up properly if there's less! A chopped chocolate bar melts more easily, but you can also use dark chocolate chips.
    • Heavy cream- Use heavy whipping cream for thick, creamy chocolate ganache. Don't substitute milk or half and half because the ganache will be runny.

    Substitutions and Variations

    • Add espresso powder- 1-2 teaspoons of espresso powder will deepen the chocolate flavor. You can also fill the cookies with espresso ganache!
    • Filling options- Instead of chocolate ganache, fill these cookies with strawberry ganache, pistachio ganache, caramel ganache, raspberry ganache, peanut butter, or salted caramel sauce!

    Step by Step Instructions

    Before you start, line two baking sheets with parchment paper and set aside.

    Dry ingredients in a bowl with a whisk.

    Step 1: First, add the all purpose flour, cocoa powder, and salt to a medium bowl. Whisk until combined, then set aside.

    Butter and sugar creamed in a bowl.

    Step 2: Next, add softened butter, granulated sugar, and brown sugar to a separate large bowl. Cream the ingredients together with an electric mixer on medium-high speed until light and fluffy.

    Wet ingredients for cookies mixed in a bowl.

    Step 3: Add the egg yolks and vanilla to the mixture. Beat on medium speed until pale and fluffy.

    Chocolate cookie dough in a glass bowl.

    Step 4: Pour the flour mixture into the bowl. Mix on low speed just until combined with no dry streaks of flour remaining. Scrape down the sides and bottom of the bowl.

    Unbaked thumbprint cookies on a baking sheet.

    Step 5: Scoop the cookie dough into 24 portions and roll into dough balls. Transfer to the parchment-lined baking sheet and use a ยฝ teaspoon to press down into each ball of dough, creating an indent.

    Chill for at least one hour.

    Baked chocolate thumbprint cookie on a wire rack without filling.

    Step 6: Preheat the oven to 350 degrees Fahrenheit (180 degrees Celsius). Arrange the dough on the baking sheets with 1 inch between each so they don't spread into each other.

    Bake until the edges are set but the middles still look slightly underdone. Take the cookies out of the oven and let cool on the hot pan for 5 minutes before transferring to a wire rack to cool completely.

    Chocolate and heavy cream in a bowl.

    Step 7: For the ganache, start by adding dark chocolate to a small bowl. In a separate bowl, warm cream in the microwave until it simmers around the edges.

    Pour over the chocolate, let sit for 1 minute. Ensure the chocolate is completely covered in hot cream so it starts melting.

    Close up of chocolate ganache in a bowl.

    Step 8: Whisk the cream and chocolate together. It will look lumpy at first but comes together for a silky chocolate ganache! Stir in the butter until combined.

    Filled chocolate ganache cookies on a wire rack.

    Step 9: Spoon ganache into the indent of each cookie. Alternatively, you can add the ganache to a piping bag and pipe it in the centers. Chill in the refrigerator until the ganache sets.

    Close up of chocolate ganache thumbprint cookies.

    Step 10: Sprinkle flaky salt, rainbow sprinkles, or crushed candy canes on top of each cookie and enjoy!

    Expert Baking Tips

    1. Measure your flour correctly. I always recommend measuring flour in grams with a digital scale. Flour is easy to compact in a measuring cup, which causes you to use too much. Too much flour equals dry cookies that don't spread! If you don't have a scale, fluff the flour up in the bag, then scoop it into your measuring cup. Level off the excess and you're good to go.
    2. Ensure all dough balls are the same size. The cookies bake evenly if each dough ball is the same size. Each ball should have about 1 tablespoon of dough or weigh 25 grams. A cookie scoop or kitchen scale comes in handy here!
    3. Use ยฝ teaspoon to make indents. While these are called thumbprint cookies, using a ยฝ teaspoon to make the indents makes the cookies prettier and more even.
    4. Reshape baked cookies. If your cookies come out looking wonky and misshapen, you can swirl a round cookie cutter around the edges to push them in, making them perfect circles! Do this right when you pull the cookies out of the oven before the edges harden.

    Storage and Freezing

    I recommend eating the cookies fresh for the snappiest texture. You can store them in an airtight container in the refrigerator for up to 5 days, but the texture gets softer and more chewy. I personally like a chewy cookie!

    Freezing

    Freeze the cookies in a sealed container for up to 2 months. Thaw overnight in the refrigerator before eating.

    A stack of chocolate ganache cookies with a bite taken out of the top cookie.

    Frequently Asked Questions

    Do I really need to chill the dough?

    Yes! Dough that isn't chilled will spread too much in the oven and the cookies' indents will disappear. Chilling also helps the flavors marry for a more intense fudgy taste like a brownie!

    Can I make the cookie dough ahead of time?

    Yes! You can make the dough, form it into indented balls, and store in an airtight container in the refrigerator for up to 48 hours.
    You can also freeze the dough balls. Freeze on the lined baking sheet for 2 hours, then transfer to a freezer-safe bag for up to 2 months. Bake the cookies directly from frozen, adding 1-2 more minutes on the bake time.

    Is ganache the same as fudge?

    Ganache and fudge are similar, but they're not the same! Ganache is a mix of chocolate and heavy cream (sometimes butter), making it rich, smooth, and pourable when warm.
    Fudge sauce, however, is made with chocolate, sugar, butter, and usually corn syrup or milk, giving it a thicker, gooey consistency.ย 

    More Cookie Recipes to Try

    • Lemon rosemary shortbread cookies on a white plate.
      Lemon Rosemary Shortbread Cookies
    • A chocolate chip cookie pie topped with whipped cream dollops.
      Brown Butter Chocolate Chip Cookie Pie
    • Close up of a pumpkin molasses cookie garnished with sea salt.
      Chewy Pumpkin Molasses Cookies
    • Close up of a blueberry cookie with cream cheese frosting.
      Blueberry Cheesecake Cookies with Cream Cheese Frosting

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    ๐Ÿ“– Recipe

    A stack of chocolate ganache thumbprint cookies with a bite taken out of the top cookie.

    Chocolate Ganache Thumbprint Cookies

    Megan Weimer
    These chocolate ganache thumbprint cookies have a crisp shortbread base and rich, decadent ganache filling. Perfect for holiday baking and chocolate lovers!
    5 from 2 votes
    Print Recipe Pin Recipe
    Prep Time 15 minutes mins
    Cook Time 10 minutes mins
    Chill Time 1 hour hr
    Total Time 1 hour hr 25 minutes mins
    Course Dessert
    Cuisine American
    Servings 24 cookies
    Calories 140.9 kcal

    Equipment

    • 1 Electric hand mixer

    Need Metric or US Customary Measurements?

    Use the buttons below to toggle between grams and cups!

    Ingredients
     
     

    Cookies

    • 240 grams all purpose flour
    • 40 grams cocoa powder
    • ยฝ teaspoon salt
    • 226 grams unsalted butter room temperature
    • 100 grams granulated sugar
    • 26 grams brown sugar
    • 2 egg yolks room temperature
    • 2 teaspoons vanilla extract

    Chocolate Ganache

    • 100 grams dark chocolate
    • 60 grams heavy cream
    • 1 tablespoon unsalted butter cold

    Instructions
     

    Cookies

    • Line two baking sheets with parchment paper and set aside.
    • Add flour, cocoa powder, and salt to a medium bowl. Whisk until combined, set aside.
      240 grams all purpose flour, 40 grams cocoa powder, ยฝ teaspoon salt
    • Add butter, granulated sugar, and brown sugar to a separate large bowl. Cream together with an electric mixer on medium-high speed for 2-3 minutes.
      226 grams unsalted butter, 100 grams granulated sugar, 26 grams brown sugar
    • Add the egg yolks and vanilla to the mixture. Beat until pale and fluffy.
      2 egg yolks, 2 teaspoons vanilla extract
    • Add in the dry ingredients and mix on low speed just until combined.
    • Scoop the dough into 24 portions, then roll into balls. Each ball should have about 25 grams (1 tablespoon of dough).
    • Transfer the dough to the baking sheets and use a ยฝ teaspoon to press down into the balls to create an indent. Chill indented dough balls for at least one hour.
    • Preheat the oven to 350 degrees Fahrenheit (180 degrees Celsius). Arrange the dough on the baking sheets with about 1 inch between each. Bake for 10-13 minutes.
    • Remove from the oven and let them cool on the hot tray for 10 minutes. Transfer to a wire rack to cool completely.

    Chocolate Ganache

    • Add the dark chocolate to a small bowl. In a separate bowl, heat the heavy cream in the microwave for 1 minute or until bubbling around the edges.
      100 grams dark chocolate, 60 grams heavy cream
    • Pour the heavy cream over the chocolate and let it sit for 1 minute.
    • Whisk the cream and chocolate together, then stir in the butter until combined.
      1 tablespoon unsalted butter

    Assembly

    • Spoon 1 teaspoon of ganache into the indent of each cookie. Chill in the refrigerator for 10 minutes to set the ganache.
    • Sprinkle the cookies with flaky salt and enjoy!

    Notes

    Measure the flour in grams with a kitchen scale for best results.
    Storage: Eat the cookies fresh for the most crisp texture. Store in an airtight container in the refrigerator for up to 5 days, but the texture will be softer.
    Freezing: ย Freeze baked, completely cool cookies in a sealed container for up to 2 months. Thaw in the refrigerator overnight before enjoying.

    Nutrition

    Serving: 1cookieCalories: 140.9kcalCarbohydrates: 9.5gProtein: 1.2gFat: 11.4gSaturated Fat: 7gPolyunsaturated Fat: 0.5gMonounsaturated Fat: 3.1gTrans Fat: 0.3gCholesterol: 40.6mgSodium: 52.5mgPotassium: 65.3mgFiber: 1.1gSugar: 6.4gVitamin A: 309.9IUVitamin C: 0.01mgCalcium: 12.4mgIron: 0.9mg
    Tried this recipe?Let us know how it was!

    More Cookie Recipes

    • Various shaped chocolate chip cut-out cookies on a wire cooling rack on a tan surface.
      Chocolate Chip Cut-Out Cookies (with Mini Chocolate Chips)
    • Heart shaped cookies on a serving board.
      Soft Red Velvet Cut Out Cookies
    • Red velvet thumbprint cookies filled with cream cheese on a white plate.
      Red Velvet Thumbprint Cookies with Cream Cheese Filling
    • Chewy Salted Caramel Oatmeal Cookies

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    About Megan Weimer

    Megan Weimer is the recipe developer, writer, and food photographer behind Dollop of Dough. Since 2020, she's been inspiring home bakers to create delicious dessert recipes for any occasion that are easy, reliable, and tested in her own kitchen.

    Reader Interactions

    Comments

    1. laura f

      December 14, 2024 at 6:19 pm

      A total disaster! Please check your recipe. I followed it precisely measuring ingredients as grams. The thumbprints flattened completely and were a gooey mess of butter and cocoa.

      Reply
      • Megan Weimer

        December 16, 2024 at 1:19 pm

        Thank you so much for this comment, because there was in fact a typo in the recipe!!! I just updated and hope you try it again. I'm so sorry!

        Reply
    2. Tiffany

      July 04, 2025 at 10:00 pm

      5 stars
      I just made these and they came out great. It helped to refrigerate the cookies a little before making the indent so that they wouldnโ€™t stick to my spoon. Delicious!

      Reply
    5 from 2 votes (1 rating without comment)

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    Hi there, I'm Megan!

    Welcome to Dollop of Dough! I'm a self-taught baker and professional recipe developer based in Chicago. I created this blog to share simple baked goods and dessert recipes that are easy to prepare for everyday occasions. With each recipe, I hope to spark joy and inspire my community of dessert enthusiasts.

    Read more about Megan here!

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    A stack of chocolate ganache cookies with a bite taken out of the top cookie.

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